Publications

This section contains publications published by ISI over the past several decades.

2021

User-friendly comparison of similarity algorithms on wikidata

Filip Ilievski, Pedro Szekely, Gleb Satyukov, Amandeep Singh
arXiv preprint arXiv:2108.05410,  2021

WIRE: Resource-efficient scaling with online prediction for DAG-based workflows

Bing Xie, Qiang Cao, Mayuresh Kunjir, Linli Wan, Jeff Chase, Anirban Mandal, Mats Rynge
2021 IEEE International Conference on Cluster Computing (CLUSTER), 35-46,  2021

De novo 3D models of SARS-CoV-2 RNA elements from consensus experimental secondary structures

Ramya Rangan, Andrew M Watkins, Jose Chacon, Rachael Kretsch, Wipapat Kladwang, Ivan N Zheludev, Jill Townley, Mats Rynge, Gregory Thain, Rhiju Das
Nucleic acids research 49 (6), 3092-3108,  2021

Agenda Pushing in Email to Thwart Phishing

Hyundong Cho, Genevieve Bartlett, Marjorie Freedman
Proceedings of the 1st Workshop on Document-grounded Dialogue and …,  2021

Probing Commonsense Explanation in Dialogue Response Generation

Pei Zhou, Pegah Jandaghi, Bill Yuchen Lin, Justin Cho, Jay Pujara, Xiang Ren
EMNLP 2021 Findings,  2021

Investigating transfer learning for characterization and performance prediction in unconventional reservoirs

Jodel Cornelio, Syamil Mohd Razak, Atefeh Jahandideh, Behnam Jafarpour, Young Cho, Hui-Hai Liu, Ravimadhav Vaidya
SPE Middle East Oil and Gas Show and Conference, D031S031R007,  2021

Integrating deep learning and physics-based models for improved production prediction in unconventional reservoirs

Syamil Mohd Razak, Jodel Cornelio, Atefeh Jahandideh, Behnam Jafarpour, Young Cho, Hui-Hai Liu, Ravimadhav Vaidya
SPE Middle East Oil and Gas Show and Conference, D031S031R003,  2021

Physics-assisted transfer learning for production prediction in unconventional reservoirs

J Cornelio, S Mohd Razak, A Jahandideh, Y Cho, HH Liu, R Vaidya, B Jafarpour
Unconventional Resources Technology Conference, 26–28 July 2021, 3669-3682,  2021

A physics-guided deep learning predictive model for robust production forecasting and diagnostics in unconventional wells

Syamil Mohd Razak, Jodel Cornelio, Young Cho, Hui-Hai Liu, Ravimadhav Vaidya, Behnam Jafarpour
Unconventional Resources Technology Conference, 26–28 July 2021, 1843-1850,  2021

Digital signal transition counters for digital integrated circuits

YH Cho, SS Bhargav, A Goodney
US Patent 10,963,026,  2021

Pervasive power generation system

Y Cho, D Rae, C Webb, G LaFramboise, L Olabinjo, A Goodney
US Patent 10,910,962,  2021

End-to-end generative zero-shot learning via few-shot learning

Georgios Chochlakis, Efthymios Georgiou, Alexandros Potamianos
arXiv preprint arXiv:2102.04379,  2021

Network security using inflated files for anomaly detection

MK Monaco, D Negron, B Satira, M Collins
US Patent 10,924,502,  2021

The Pegasus workflow management system: translational computer science in practice

Ewa Deelman, Rafael Ferreira da Silva, Karan Vahi, Mats Rynge, Rajiv Mayani, Ryan Tanaka, Wendy Whitcup, Miron Livny
Journal of Computational Science 52, 101200,  2021

End-to-end online performance data capture and analysis for scientific workflows

George Papadimitriou, Cong Wang, Karan Vahi, Rafael Ferreira da Silva, Anirban Mandal, Zhengchun Liu, Rajiv Mayani, Mats Rynge, Mariam Kiran, Vickie E Lynch, Rajkumar Kettimuthu, Ewa Deelman, Jeffrey S Vetter, Ian Foster
Future Generation Computer Systems 117, 387-400,  2021

Mining Scientific Workflows for Anomalous Data Transfers

Huy Tu, George Papadimitriou, Mariam Kiran, Cong Wang, Anirban Mandal, Ewa Deelman, Tim Menzies
arXiv preprint arXiv:2103.12221,  2021

Blueprint: Cyberinfrastructure Center of Excellence

Ewa Deelman, Anirban Mandal, Angela P Murillo, Jarek Nabrzyski, Valerio Pascucci, Robert Ricci, Ilya Baldin, Susan Sons, Laura Christopherson, Charles Vardeman, Rafael Ferreira da Silva, Jane Wyngaard, Steve Petruzza, Mats Rynge, Karan Vahi, Wendy R Whitcup, Josh Drake, Erik Scott
arXiv preprint arXiv:2103.04195,  2021

Workflows Community Summit: Bringing the Scientific Workflows Community Together

Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Dan Laney, Dong Ahn, Shantenu Jha, Carole Goble, Lavanya Ramakrishnan, Luc Peterson, Bjoern Enders, Douglas Thain, Ilkay Altintas, Yadu Babuji, Rosa M Badia, Vivien Bonazzi, Taina Coleman, Michael Crusoe, Ewa Deelman, Frank Di Natale, Paolo Di Tommaso, Thomas Fahringer, Rosa Filgueira, Grigori Fursin, Alex Ganose, Bjorn Gruning, Daniel S Katz, Olga Kuchar, Ana Kupresanin, Bertram Ludascher, Ketan Maheshwari, Marta Mattoso, Kshitij Mehta, Todd Munson, Jonathan Ozik, Tom Peterka, Loic Pottier, Tim Randles, Stian Soiland-Reyes, Benjamin Tovar, Matteo Turilli, Thomas Uram, Karan Vahi, Michael Wilde, Matthew Wolf, Justin Wozniak
arXiv e-prints, arXiv: 2103.09181,  2021

Reproducing GW150914: The first observation of gravitational waves from a binary black hole merger

Duncan A Brown, Karan Vahi, Michela Taufer, Von Welch, Ewa Deelman
Computing in Science & Engineering 23 (2), 73-82,  2021

A lightweight method for evaluating in situ workflow efficiency

Tu Mai Anh Do, Loïc Pottier, Silvina Caíno-Lores, Rafael Ferreira da Silva, Michel A Cuendet, Harel Weinstein, Trilce Estrada, Michela Taufer, Ewa Deelman
Journal of Computational Science 48, 101259,  2021