Publications
This section contains publications published by ISI over the past several decades.
2021
NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding
Kanix Wang, Robert Stevens, Halima Alachram, Yu Li, Larisa Soldatova, Ross King, Sophia Ananiadou, Annika M Schoene, Maolin Li, Fenia Christopoulou, José Luis Ambite, Joel Matthew, Sahil Garg, Ulf Hermjakob, Daniel Marcu, Emily Sheng, Tim Beißbarth, Edgar Wingender, Aram Galstyan, Xin Gao, Brendan Chambers, Weidi Pan, Bohdan B Khomtchouk, James A Evans, Andrey Rzhetsky
NPJ systems biology and applications 7 (1), 38, 2021
EPS: automated feature selection in case–control studies using extreme pseudo-sampling
Ruhollah Shemirani, Stephane Wenric, Eimear Kenny, José Luis Ambite
Bioinformatics 37 (19), 3372-3373, 2021
W-TSS: A Wavelet-Based Algorithm for Discovering Time Series Shapelets
Kenan Li, Huiyu Deng, John Morrison, Rima Habre, Meredith Franklin, Yao-Yi Chiang, Katherine Sward, Frank D Gilliland, José Luis Ambite, Sandrah P Eckel
Sensors 21 (17), 5801, 2021
Membership inference attacks on deep regression models for neuroimaging
Umang Gupta, Dimitris Stripelis, Pradeep K Lam, Paul Thompson, José Luis Ambite, Greg Ver Steeg
Medical Imaging with Deep Learning, 228-251, 2021
Selecting Clustering Algorithms for IBD Mapping
Ruhollah Shemirani, Gillian M Belbin, Keith Burghardt, Kristina Lerman, Christy L Avery, Eimear E Kenny, Christopher R Gignoux, José Luis Ambite
bioRxiv.08. 11.456036, 2021
Rapid detection of identity-by-descent tracts for mega-scale datasets
Ruhollah Shemirani, Gillian M Belbin, Christy L Avery, Eimear E Kenny, Christopher R Gignoux, José Luis Ambite
Nature communications 12 (1), 3546, 2021
Toward a fine-scale population health monitoring system
Gillian M Belbin, Sinead Cullina, Stephane Wenric, Emily R Soper, Benjamin S Glicksberg, Denis Torre, Arden Moscati, Genevieve L Wojcik, Ruhollah Shemirani, Noam D Beckmann, Ariella Cohain, Elena P Sorokin, Danny S Park, Jose-Luis Ambite, Steve Ellis, Adam Auton, Erwin P Bottinger, Judy H Cho, Ruth JF Loos, Noura S Abul-Husn, Noah A Zaitlen, Christopher R Gignoux, Eimear E Kenny
Cell 184 (8), 2068-2083. e11, 2021
Scaling neuroscience research using federated learning
Dimitris Stripelis, José Luis Ambite, Pradeep Lam, Paul Thompson
2021 IEEE 18th international symposium on biomedical imaging (ISBI), 1191-1195, 2021
Semi-synchronous federated learning
Dimitris Stripelis, José Luis Ambite
arXiv preprint arXiv:2102.02849, 2021
3D Convolutional Neural Networks for Classification of Alzheimer's and Parkinson's Disease with T1-Weighted Brain MRI
Paul M. Thompson. Nikhil J. Dhinagar, Sophia I. Thomopoulos, Conor Owens-Walton, Dimitris Stripelis, Jose Luis Ambite, Greg Ver Steeg, Daniel Weintraub, Philip Cook, Corey McMillan
17th International Symposium on Medical Information Processing and Analysis …, 2021
A simple three-step approach for the automatic detection of exaggerated statements in health science news
Jasabanta Patro, Sabyasachee Baruah
Proceedings of the 16th Conference of the European Chapter of the …, 2021
Can an Artificial Intelligence Online Engine Diagnose Migraine as well as a Headache Specialist using a Semi-Structured Interview? A Multi-Center, Cross-Sectional Study
R Cowan, A Rapoport, J Blythe, J Rothrick, K Knievel, A Peretz, E Ekpo, B Sanjanwala, Y Woldeamanuel
CEPHALALGIA 41 (1_ SUPPL), 280-280, 2021
DEGREE: A data-efficient generation-based event extraction model
I Hsu, Kuan-Hao Huang, Elizabeth Boschee, Scott Miller, Prem Natarajan, Kai-Wei Chang, Nanyun Peng
arXiv preprint arXiv:2108.12724, 2021
Keynote Abstract: Events on a Global Scale: Towards Language-Agnostic Event Extraction
Elizabeth Boschee
Proceedings of the 4th Workshop on Challenges and Applications of Automated …, 2021
Event extraction as natural language generation
I Hsu, Kuan-Hao Huang, Elizabeth Boschee, Scott Miller, Prem Natarajan, Kai-Wei Chang, Nanyun Peng
arXiv preprint arXiv:2108.12724, 2021
Degree: A data-efficient generative event extraction model
I-Hung Hsu, Kuan-Hao Huang, Elizabeth Boschee, Scott Miller, Prem Natarajan, Kai-Wei Chang, Nanyun Peng
arXiv preprint arXiv:2108.12724, 2021
The multilingual tedx corpus for speech recognition and translation
Elizabeth Salesky, Matthew Wiesner, Jacob Bremerman, Roldano Cattoni, Matteo Negri, Marco Turchi, Douglas W Oard, Matt Post
arXiv preprint arXiv:2102.01757, 2021
Findings of the Iwslt 2021 Evaluation Campaign
Elizabeth Salesky, Matteo Negri, Katsuhito Sudoh, Ondrej Bojar, Marcello Federico, Matthew Wiesner, Juan Pino, Satoshi Nakamura, Jan Niehues, Jacob Bremerman, Alex Waibel, Antonios Anastasopoulos, Marco Turchi, Changhan Wang, Xutai Ma, Roldano Cattoni, Maha Elbayad, Sebastian Stüker
Proceedings of the 18th International Conference on Spoken Language …, 2021
Unequal impact and spatial aggregation distort COVID-19 growth rates
Siyi Guo, Keith Burghardt, Kristina Lerman
Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2021
Disaggregation via Gaussian regression for robust analysis of heterogeneous data
Nazanin Alipourfard, Keith Burghardt, Kristina Lerman
Handbook of Computational Social Science, Volume 2, 269-288, 2021