ISI Directory
Deborah Khider, Ph.D
Publications
2025
The Project Pythia Hackathon: Developing Scientists' Skills and Community in Open Source Development and Education
M Drew A Camron, Shanice Bailey, Evan Andrew Belkin, Jorge Bravo, Debanjana Das, Orhan Eroglu, Katelyn FitzGerald, Robert Ford, Maxwell A Grover, Joseph Gum, Jhordanne Jones, Julia Kent, Deborah Khider, Ryan M May, James Munroe, Brian EJ Rose, Negin Sobhani, JT Thielen, Curtis Louis Walker
105th AMS Annual Meeting, 2025
Adapting agriculture to climate catastrophes: The nuclear winter case
Yuning Shi, Felipe Montes, Francesco Di Gioia, Lili Xia, Charles G Bardeen, Charles Anderson, Yolanda Gil, Deborah Khider, Varun Ratnakar, Armen Kemanian
Environmental Research Letters, 2025
2024
cfr (v2024.1.26): a Python package for climate field reconstruction
Feng Zhu, Julien Emile-Geay, Gregory J Hakim, Dominique Guillot, Deborah Khider, Robert Tardif, Walter A Perkins
Geoscientific Model Development 17 (8), 3409-3431, 2024
The LiPD Research Ecosystem
Julien Emile-Geay, Nicholas McKay, Deborah Khider, Feng Zhu, David Edge
AGU23, 2024
Detecting paleoclimate transitions with Laplacian eigenmaps of recurrence matrices (LERM)
Alexander James, Julien Emile‐Geay, Nishant Malik, Deborah Khider
Paleoceanography and Paleoclimatology 39 (1), e2023PA004700, 2024
2023
CyberPaleo: Informatics Approaches to the Paleogeosciences Poster
Julien Emile-Geay, Deborah Khider, Nicholas McKay, Feng Zhu
AGU23, 2023
Water mass classification by clustering passive tracer distributions-a first foray
Jordan Landers, Julien Emile-Geay, Deborah Khider
AGU Fall Meeting Abstracts 2023 (1762), OS41C-1762, 2023
PReSto, a Paleoclimate Reconstruction Storehouse-Increasing the utility of paleoclimate reconstructions through innovative online tools
Michael P Erb, Nicholas McKay, David Edge, Deborah Khider, Julien Emile-Geay, Cody Routson, Feng Zhu
AGU Fall Meeting Abstracts 2023 (1566), PP33E-1566, 2023
PaleoCube: Enabling cloud-based paleoclimatology
Deborah Khider, Varun Ratnakar, Julien Emile-Geay, Feng Zhu, Alexander James, Jordan Landers, Yolanda Gil, Maximiliano Osorio, Hernan Vargas, Nicholas McKay
AGU Fall Meeting Abstracts 2023 (603), IN23B-0603, 2023
A Cross-Sectional Speleothem Study of Linkages between Growth Rates, Oxygen Isotopes, and Insolation
Alexander James, Julien Emile-Geay, Judson Wiley Partin, Deborah Khider, Jordan Landers
AGU Fall Meeting Abstracts 2023 (1371), PP23A-1371, 2023
cfr: a Python package for Climate Field Reconstruction
Feng Zhu, Julien Emile-Geay, Gregory J Hakim, Dominique Guillot, Robert Tardif, Andre Perkins, Deborah Khider
AGU Fall Meeting Abstracts 2023 (1249), PP13D-1249, 2023
cfr (v2023. 9.14): a Python package for climate field reconstruction
Feng Zhu, Julien Emile-Geay, Gregory J Hakim, Dominique Guillot, Deborah Khider, Robert Tardif, Walter A Perkins
EGUsphere 2023, 1-34, 2023
Detecting paleoclimate transitions with Laplacian Eigenmaps for Recurrence Matrices (LERM)
Alexander James, Julien Emile-Geay, Nishant Malik, Deborah Khider
Authorea Preprints, 2023
2022
Pyleoclim: Paleoclimate timeseries analysis and visualization with Python
Deborah Khider, Julien Emile‐Geay, Feng Zhu, Alexander James, Jordan Landers, Varun Ratnakar, Yolanda Gil
Paleoceanography and Paleoclimatology 37 (10), e2022PA004509, 2022
Database interoperability, uncertainty quantification and reproducible workflows in the paleogeosciences
Nicholas McKay, J Emile-Geay, Deborah Khider
Earthcube Annual Meeting 2022, 2022
Towards Capturing Scientific Reasoning to Automate Data Analysis.
Yolanda Gil, Deborah Khider, Maximiliano Osorio, Varun Ratnakar, Hernan Vargas, Daniel Garijo, Suzanne A Pierce
CogSci, 2022
PaleoRec: A sequential recommender system for the annotation of paleoclimate datasets
Shravya Manety, Deborah Khider, Christopher Heiser, Nicholas McKay, Julien Emile-Geay, Cody Routson
Environmental Data Science 1, e4, 2022
An AI Approach to Integrating Climate, Hydrology, and Agriculture Models
Belete Berhanu, Ethiopia Bisrat, Yolanda Gil, Deborah Khider, Maximiliano Osorio, Varun Ratnakar, Hernán Vargas
2022
2021
LinkedEarth Community for Paleogeoscience: Updates and Future Directions
Deborah Khider, Julien Emile-Geay, Nicholas McKay
AGU Fall Meeting 2021, 2021
Artificial intelligence for modeling complex systems: taming the complexity of expert models to improve decision making
Yolanda Gil, Daniel Garijo, Deborah Khider, Craig A Knoblock, Varun Ratnakar, Maximiliano Osorio, Hernán Vargas, Minh Pham, Jay Pujara, Basel Shbita, Binh Vu, Yao-Yi Chiang, Dan Feldman, Yijun Lin, Hayley Song, Vipin Kumar, Ankush Khandelwal, Michael Steinbach, Kshitij Tayal, Shaoming Xu, Suzanne A Pierce, Lissa Pearson, Daniel Hardesty-Lewis, Ewa Deelman, Rafael Ferreira Da Silva, Rajiv Mayani, Armen R Kemanian, Yuning Shi, Lorne Leonard, Scott Peckham, Maria Stoica, Kelly Cobourn, Zeya Zhang, Christopher Duffy, Lele Shu
ACM Transactions on Interactive Intelligent Systems 11 (2), 1-49, 2021
geoChronR–an R package to model, analyze, and visualize age-uncertain data, Geochronology, 3, 149–169
NP McKay, J Emile-Geay, D Khider
2021
2020
Artificial intelligence in the paleogeosciences: progress, challenges, and opportunities
Deborah Khider
AGU Fall Meeting Abstracts 2020, IN024-02, 2020
geoChronR–an R package to model, analyze, and visualize age-uncertain data
Nicholas P McKay, Julien Emile-Geay, Deborah Khider
Geochronology Discussions 2020, 1-33, 2020
A global database of Holocene paleotemperature records
Krystyna Saunders, Monika Toth, Anais Orsi, Elizabeth Thomas, Nicholas McKay, Michael Erb, Paola Moffa-Sanchez, Darrel Kaufman, Lukas Jonkers, Cody Routson, Basil Davis, Oliver Heiri, Samuel Jaccard, Jessica Tierney, Christoph Datwyler, Yarrow Axford, Thomas Brussel, Olivier Cartapanis, Brian Chase, Andria Dawson, Anne de Vernal, Stefan Engels, Jeremiah Marsicek, Carrie Morrill, Kira Rehfeld, Philipp S Sommer, Marcela Tonello, Richard Vachula, Andrei Andreev, Sebastien Bertrand, Boris Biskaborn, Manuel Bringue, Stephen Brooks, Magaly Caniupan, Manuel Chevalier, Les Cwynar, Julien Emile-Gaey, John Fegyveresi, Angelica Feurdean, Walter Finsinger, Marie-Claude Fortin, Louise Foster, Mathew Fox, Konrad Gajewski, Martin Grosjean, Sonja Hausmann, Markus Heinrichs, Naomi Holmes, Boris Ilyashuk, Elena Ilyashuk, Steve Juggins, Deborah Khider, Karin Koinig, Peter Langdon, Isabelle Larocque-Tobler, Jianyong Li, Andre Loter, Tomi Luoto, Anson Mackay, Eniko Magyari, Steven Malevich, Bryan Mark, Julieta Massaferro, Vincent Montade, Larisa Nazarova, Elena Novenko, Peter Pril, Emma Paerson, Matthew Peros, Reinhard Pienitz, Mateusz Płóciennik, David Porinchu, Aaron Potito, Andrew Rees, Scott Reinemann, Stephen Roberts, Nicolas Rolland, Sakari Salonen, Angela Self, Heikki Seppa, Shyhrete Shala, Jeannine St-Jacques, Barbara Stenni, Pol Tarrats, Valerie van den Bos, Ian Walker, Snezhana Zhilich, Janet Wilmshurst, Liudmila Syrykh, Karen Taylor, Gaute Velle, Eugene Wahl, Enlou Zhang
Scientific data 7, 2020
Towards automating time series analysis for the paleogeosciences
Deborah Khider, Pratheek Athreya, Varun Ratnakar, Yolanda Gil, Feng Zhu, Myron Kwan, Julien Emile-Geay
Proceedings of the Sixth Workshop on Mining and Learning from Time Series …, 2020
2019
PaCTS: A Crowdsourced Reporting Standard for Paleoclimate
Deborah Khider
AGU Fall Meeting 2019, 2019
Towards PaCTS v2. 0: A crowdsourced standard for reporting paleoclimate data
Deborah Khider
AGU Fall Meeting 2019, 2019
Advances in Stochastic, Multihypothesis, and Other Data-Driven Methods for Environmental and Earth System Modeling II Posters
GH Crystal Ng, Xue Feng, Deborah Khider, Anthony P Walker
AGU Fall Meeting 2019, 2019
MINT: An intelligent interface for understanding the impacts of climate change on hydrological, agricultural and economic systems
Deborah Khider, Yolanda Gil, Kelly M Cobourn, Ewa Deelman, Christopher Duffy, R Ferreira da Silva, Armen Kemanian, Craig Knoblock, Vipin Kumar, Scott Dale Peckham, Yao-Yi Chiang, Dan Feldman, Daniel Garijo, D Hardesty Lewis, Ankush Khandelwal, Rajiv Mayani, Maximiliano Osorio, Minh Pahm, Suzanne A Pierce, Jay Pujara, Varun Ratnakar, Lele Shu, Hae Jin Song, Basel Shbita, Maria Stoica, Binh Vu, Lissa Pearson
AGU Fall Meeting Abstracts 2019, PA33C-1108, 2019
Autots: Automated machine learning for time series analysis
Deborah Khider, Feng Zhu, Yolanda Gil
AGU Fall Meeting Abstracts 2019, PP43D-1637, 2019
PaCTS 1.0: a crowdsourced reporting standard for paleoclimate data
Deborah Khider, Julien Emile‐Geay, Nicholas P McKay, Yolanda Gil, Daniel Garijo, Varun Ratnakar, Montserrat Alonso‐Garcia, Sébastien Bertrand, Oliver Bothe, Peter Brewer, Andy Bunn, Manuel Chevalier, Laia Comas‐Bru, Adam Csank, Emilie Dassié, K DeLong, Thomas Felis, Pierre Francus, Amy Frappier, William Gray, Simon Goring, Lukas Jonkers, Michael Kahle, D Kaufman, Natalie M Kehrwald, Belen Martrat, H McGregor, Julie Richey, Aandreas Schmittner, Nick Scroxton, Elaine Sutherland, Kaustubh Thirumalai, Kathryn Allen, Fabien Arnaud, Yarrow Axford, Timothy Barrows, Lucie Bazin, Suzanne E Pilaar Birch, Elizabeth Bradley, Josh Bregy, Emilie Capron, Olivier Cartapanis, H‐W Chiang, Kim M Cobb, Maxime Debret, René Dommain, Jianghui Du, Kelsey Dyez, Suellyn Emerick, Michael P Erb, Georgina Falster, Walter Finsinger, Daniel Fortier, Nicolas Gauthier, Steve George, E Grimm, Jennifer Hertzberg, F Hibbert, Aubrey Hillman, William Hobbs, Mmatthew Huber, Anna LC Hughes, Samuel Jaccard, Jiaoyang Ruan, Markus Kienast, Bronwen Konecky, Gaël Le Roux, Vyacheslav Lyubchich, Valdir Felipe Novello, Lydia Olaka, Judson W Partin, Christof Pearce, Steven J Phipps, Cécile Pignol, Natalia Piotrowska, M‐S Poli, Alexander Prokopenko, Fran Schwanck, Christian Stepanek, George EA Swann, Richard Telford, E Thomas, Zoé Thomas, Sarah Truebe, Lucien Von Gunten, Amanda Waite, Nils Weitzel, Bruno Wilhelm, John Williams, Jason J Williams, Mai Winstrup, Ning Zhao, Yuxin Zhou
Paleoceanography and Paleoclimatology 34 (10), 1570-1596, 2019
OKG-Soft: An open knowledge graph with machine readable scientific software metadata
Daniel Garijo, Maximiliano Osorio, Deborah Khider, Varun Ratnakar, Yolanda Gil
2019 15th International Conference on eScience (eScience), 349-358, 2019
Climate models can correctly simulate the continuum of global-average temperature variability
Feng Zhu, Julien Emile-Geay, Nicholas P McKay, Gregory J Hakim, Deborah Khider, Toby R Ault, Eric J Steig, Sylvia Dee, James W Kirchner
Proceedings of the National Academy of Sciences 116 (18), 8728-8733, 2019
An intelligent interface for integrating climate, hydrology, agriculture, and socioeconomic models
Daniel Garijo, Deborah Khider, Varun Ratnakar, Yolanda Gil, Ewa Deelman, Rafael Ferreira Da Silva, Craig Knoblock, Yao-Yi Chiang, Minh Pham, Jay Pujara, Binh Vu, Dan Feldman, Rajiv Mayani, Kelly Cobourn, Chris Duffy, Armen Kemanian, Lele Shu, Vipin Kumar, Ankush Khandelwal, Kshitij Tayal, Scott Peckham, Maria Stoica, Anna Dabrowski, Daniel Hardesty-Lewis, Suzanne Pierce
Companion Proceedings of the 24th International Conference on Intelligent …, 2019
Considerations for Globigerinoides ruber (White and Pink) Paleoceanography: Comprehensive Insights From a Long‐Running Sediment Trap
Julie N Richey, Kaustubh Thirumalai, Deborah Khider, Caitlin E Reynolds, Judson W Partin, Terrence M Quinn
Paleoceanography and Paleoclimatology 34 (3), 353-373, 2019
The Linked Earth Ontology: A modular, extensible representation of open paleoclimate data
Julien Emile-Geay, Deborah Khider, Daniel Garijo, Nicholas P McKay, Yolanda Gil, V Ratnakar, Elizabeth Bradley
Zenodo, 2019
2018
Scientific workflows, reproducibility and uncertainty quantification in the paleogeosciences
Nicholas McKay, Julien Emile-Geay, Deborah Khider
AGU Fall Meeting Abstracts 2018, IN41A-07, 2018
Integrating models through knowledge-powered data and process composition
Daniel Garijo, Yolanda Gil, Kelly M Cobourn, Ewa Deelman, Christopher Duffy, R Ferreira da Silva, Armen Kemanian, Craig Knoblock, Vipin Kumar, Scott Dale Peckham, Yao-Yi Chiang, Deborah Khider, Ankush Khandelwal, Jay Pujara, Varun Ratnakar, Maria Stoica, Binh Vu, Minh Pham
AGU Fall Meeting Abstracts 2018, IN31A-02, 2018
Supporting paleoclimate research with the FAIR principle: lessons from LinkedEarth
Deborah Khider, Nicholas McKay, Julien Emile-Geay, Daniel Garijo, Yolanda Gil, Varun Ratnakar
AGU Fall Meeting Abstracts 2018, IN31B-24, 2018
AI in geosciences: progress, challenges, and opportunities.
SA Pierce, DR Fuka, MC Hill, I Ebert-Uphoff, D Khider, Y Gil
AGU Fall Meeting Abstracts 2018, IN12A-01, 2018
Climate models can correctly simulate the continuum of temperature variability
Feng Zhu, Julien Emile-Geay, Toby Ault, Nicholas McKay, Gregory J Hakim, Deborah Khider, Eric J Steig, Sylvia Dee, James W Kirchner
AGU Fall Meeting Abstracts 2018, GC34C-04, 2018
LinkedEarth: Supporting paleoclimate data standards and crowd curation
Julien Emile-Geay, D Khider, N McKay, Y Gil, D Garijo, V Ratnakar
Past Global Change Magazine 26 (2), 62-63, 2018
A semantic model catalog to support comparison and reuse
Daniel Garijo, Deborah Khider, Yolanda Gil, Lucas Augusto Carvalho, Bakinam T Essawy, Suzanne Pierce, Daniel H Lewis, Varun Ratnakar, Scott Peckham, Christopher J Duffy, Jonathan L Goodall
2018
Mint: Model integration through knowledge-powered data and process composition
Yolanda Gil, Kelly Cobourn, Ewa Deelman, Chris Duffy, Rafael Ferreira da Silva, Armen Kemanian, Craig Knoblock, Vipin Kumar, Scott Peckham, Lucas Augusto Carvalho, Yao-Yi Chang, Daniel Garijo, Ankush Khandelwal, Deborah Khider, Minh Pahm, Jay Pujara, Varun Ratnakar, Maria Stoica, Binh Vu
2018
2017
LinkedEarth and 21st century paleoclimatology: reducing data friction through standard development
Deborah Khider, Julien Emile-Geay, Nicholas McKay, Daniel Garijo, Varun Ratnakar, Yolanda Gil, Feng Zhu
AGU Fall Meeting Abstracts 2017, IN32A-03, 2017
The role of uncertainty in estimating lead/lag relationships in marine sedimentary archives: a case study from the tropical Pacific
D Khider, S Ahn, LE Lisiecki, CE Lawrence, M Kienast
Paleoceanography 32 (11), 1275-1290, 2017
A controlled crowdsourcing approach for practical ontology extensions and metadata annotations
Yolanda Gil, Daniel Garijo, Varun Ratnakar, Deborah Khider, Julien Emile-Geay, Nicholas McKay
The Semantic Web–ISWC 2017: 16th International Semantic Web Conference …, 2017
A probabilistic Pliocene–Pleistocene stack of benthic δ18O using a profile hidden Markov model
Seonmin Ahn, Deborah Khider, Lorraine E Lisiecki, Charles E Lawrence
Dynamics and Statistics of the Climate System 2 (1), dzx002, 2017
2016
Incorporating the effects of age uncertainty derived from benthic d18O alignment into paleoceanographic data compilations
Lorraine E Lisiecki, Seonmin Ahn, Geoffrey Gebbie, Alan M Jones, Deborah Khider, Charles Lawrence
AGU Fall Meeting Abstracts 2016, PP33D-04, 2016
Testing the millennial-scale Holocene solar-climate connection in the Indo-Pacific Warm Pool
Deborah Khider, Julien Emile-Geay, Nicholas McKay, Charles S Jackson, Cody Routson
AGU Fall Meeting Abstracts 2016, PP43A-2309, 2016
High Frequency Fluctuations in the Eastern Tropical North Pacific Oxygen Minimum Zone During the Last 1200 Years
Caitlin Tems, William Berelson, Robert Thunell, Xiaomei Xu, Deborah Khider
American Geophysical Union 2016, PC51A-03, 2016
Sedimentary δ15N reveal decadal to centennial fluctuations in the intensity of the eastern tropical north Pacific oxygen minimum zone during the last 1200 years
Yvonne Hamann Caitlin E. Tems, William M. Berelson, Robert Thunell, Eric Tappa, Xiaomei Xu, Deborah Khider, Steve Lund, Oscar González‐Yajimovich
Paleoceanography, 2016
2015
Probabilistic Stack of 180 Plio-Pleistocene Benthic δ18O Records Constructed Using Profile Hidden Markov Models
Lorraine E Lisiecki, Seonmin Ahn, Deborah Khider, Charles Lawrence
AGU Fall Meeting Abstracts 2015, PP13D-07, 2015
On the Timing of Glacial Terminations in the Equatorial Pacific
Deborah Khider, Seonmin Ahn, Lorraine E Lisiecki, Charles Lawrence, Markus Kienast
AGU Fall Meeting Abstracts 2015, PP53C-2365, 2015
A Bayesian, multivariate calibration for Globigerinoides ruber Mg/Ca
D Khider, G Huerta, C Jackson, LD Stott, J Emile‐Geay
Geochemistry, Geophysics, Geosystems 16 (9), 2916-2932, 2015
2014
Understanding Uncertainties in Paleoclimate and Paleoecology: Age Models, Proxy Processes, and Beyond II
Connor Nolan, John W Williams, Lorraine E Lisiecki, Deborah Khider
2014 AGU Fall Meeting, 2014
What Forced Holocene Millennial-Scale Variability? A Tale from the Western Tropical Pacific
D Khider, LD Stott, C Jackson, G Huerta
AGU Fall Meeting Abstracts 2014, PP41C-1379, 2014
Statistical Constraints on the Relative Link Between Eccentricity Forcing and the 100,000-Year Glacial Cycle
Deborah Khider, Lorraine E Lisiecki
AGU Fall Meeting Abstracts 2014, PP41D-1436, 2014
Probabilistic Generative Models for the Statistical Inference of Unobserved Paleoceanographic Events: Application to Stratigraphic Alignment for Inference of Ages
C Lawrence, L Lin, LE Lisiecki, D Khider
AGU Fall Meeting Abstracts 2014, PP41D-1427, 2014
Probabilistic sequence alignment of stratigraphic records
Luan Lin, Deborah Khider, Lorraine E Lisiecki, Charles E Lawrence
Paleoceanography 29 (10), 976-989, 2014
Assessing millennial‐scale variability during the Holocene: A perspective from the western tropical Pacific
D Khider, CS Jackson, LD Stott
Paleoceanography 29 (3), 143-159, 2014
2013
How unusual is the 20th century within the Indo-Pacific Warm Pool?
D Khider, LD Stott, R Saikku, JW Partin, CS Jackson, DE Hammond, A Newton, R Thunell
AGU Fall Meeting Abstracts 2013, PP42A-03, 2013
Assessing millennial-scale vari-ability during the Holocene: A perspec-tive from the western tropical Pacific, Paleoceanography, 29, doi: 10.1002/2013PA002534
D Khider, CS Jackson, LD Stott
Received 12, 2, 2013
2012
Assessing seasonal temperature variability from Mg/Ca and δ18O in Globigerinoides ruber from the Northern Gulf of Mexico
D Khider, TM Quinn, C Reynolds
AGU Fall Meeting Abstracts 2012, PP43A-2008, 2012
Middle East Rainfall Variability during the Common Era
Justin M Reuter, LD Stott, D Khider
AGU Fall Meeting Abstracts 2012, PP21B-1992, 2012
2011
Evidence for a bipolar seesaw during the Late Holocene
D Khider, LD Stott, R Saikku, DE Hammond
AGU Fall Meeting Abstracts 2011, PP34A-02, 2011
Assessing El Niño Southern Oscillation variability during the past millennium
D Khider, LD Stott, J Emile‐Geay, R Thunell, DE Hammond
Paleoceanography 26 (3), 2011
Paleoceanography of the Indonesian Seas over the past 25,000 years
Deborah Khider
University of Southern California, 2011
(Table 3) Lead 214 and Lead 210 concentration of sediment core MD98-2177
D Khider, Lowell D Stott, J Emile-Geay, Robert C Thunell, Douglas E Hammond
2011
Stable isotope record of sediment core MD98-2177
D Khider, Lowell D Stott, J Emile-Geay, Robert C Thunell, Douglas E Hammond
2011
(Table 2) Age determination of sediment core MD98-2177
D Khider, Lowell D Stott, J Emile-Geay, Robert C Thunell, Douglas E Hammond
2011
(Table S1) Stable carbon and oxygen isotope ratios of Pulleniatina obliquiloculata of sediment core MD98-2177
D Khider, Lowell D Stott, J Emile-Geay, Robert C Thunell, Douglas E Hammond
2011
2010
Assessing ENSO variability over the past millennium: a western tropical Pacific perspective
D Khider, LD Stott, J Emile-Geay, R Thunell
AGU Fall Meeting Abstracts 2010, PP51B-05, 2010
2009
Inter-and intrannual variability in the production of planktonic foraminifera: implications for ENSO reconstruction based on the oxygen isotope distribution of individuals
Deborah Khider, Lowell D Stott, R Thunell
AGU Fall Meeting Abstracts 2009, PP13D-1434, 2009
A new perspective on the hydroclimate variability in northern South America during the Little Ice Age
Justin Reuter, Lowell Stott, Deborah Khider, Ashish Sinha, Hai Cheng, R Lawrence Edwards
Geophysical Research Letters 36 (21), 2009